Index

A

abnumber module

align() (abnumber.Chain method) Alignment (class in abnumber)

C

cdr1_seq (abnumber.Chain property) cdr2_seq (abnumber.Chain property) cdr3_seq (abnumber.Chain property)

cdr_definition (abnumber.Chain attribute) Chain (class in abnumber) chain_type (abnumber.Chain attribute) clone() (abnumber.Chain method)

F

find_human_germlines() (abnumber.Chain method) find_merged_human_germline() (abnumber.Chain method) format() (abnumber.Alignment method) (abnumber.Chain method) (abnumber.Position method) format_tall() (abnumber.Chain method)

format_wide() (abnumber.Chain method) fr1_seq (abnumber.Chain property) fr2_seq (abnumber.Chain property) fr3_seq (abnumber.Chain property) fr4_seq (abnumber.Chain property) from_fasta() (abnumber.Chain class method) from_string() (abnumber.Position class method)

G

get_position_by_raw_index() (abnumber.Chain method) get_region() (abnumber.Position method)

graft_cdrs_onto() (abnumber.Chain method) graft_cdrs_onto_human_germline() (abnumber.Chain method)

H

has_mutation() (abnumber.Alignment method)

I

is_heavy_chain() (abnumber.Chain method) is_in_cdr() (abnumber.Position method)

is_kappa_light_chain() (abnumber.Chain method) is_lambda_light_chain() (abnumber.Chain method) is_light_chain() (abnumber.Chain method)

J

j_gene (abnumber.Chain attribute)

M

module abnumber

N

name (abnumber.Chain attribute) num_identical() (abnumber.Alignment method)

num_mutations() (abnumber.Alignment method) num_similar() (abnumber.Alignment method)

P

Position (class in abnumber) positions (abnumber.Chain property) print() (abnumber.Alignment method) (abnumber.Chain method)

print_tall() (abnumber.Chain method) print_wide() (abnumber.Chain method)

R

raw (abnumber.Alignment property) (abnumber.Chain property)

regions (abnumber.Chain property) renumber() (abnumber.Chain method)

S

scheme (abnumber.Chain attribute) seq (abnumber.Chain property)

slice() (abnumber.Alignment method) (abnumber.Chain method) species (abnumber.Chain attribute)

T

tail (abnumber.Chain attribute) to_anarci_csv() (abnumber.Chain class method)

to_dataframe() (abnumber.Chain class method) to_fasta() (abnumber.Chain class method) to_seq_record() (abnumber.Chain method)

V

v_gene (abnumber.Chain attribute)